Thank you for your response.
I updated the firmware on my device and zeroed the config. I have attached both my original ex3300 config and my current ex3400 config.
Currently i am able to communicate with the switch when plugged into ge-0/0/0-9 but i am unable to communicate with any devices plugged into a trunk port. I am assuming this has to something to do with native-vlan-id but am not sure where to go from here. Here are some facts about our network hopefully it helps
Default vlan - untagged traffic -dhcp from dc's .225 & .226
Vlan 2 - DMZ - no dhcp
Vlan 3 - Wireless -dhcp from dc's .225 & .226
Vlan 30 - Lync Voice device traffic - dhcp from dc's .225 & .226
Vlan 31 - SIP Trunk from ISP to Lync Server
Vlan 150 - Guest Wireless - recieves dhcp from firewall