I am going to assume your AE's 1 and 2 are tagged trunks and are set with vlan member all. This is why they are also associated with VLAN 0 - I believe.
There will be no harm in having VLAN 0 (which has no other members) being a part of these AE's. I see that VLAN 1 is associated with AE0.0. If you change AE 1 and 2 to have member VLANs of 1-4094 (or something similar) then the VLAN 0 reference should go away.
This is my best guess. Using VLAN 0 was stupid idea to start with, which is corrected in later SW. You could always use later code and factory default the switch, and then re-add saved config, and VLAN 0 nonsense should go away as well.
Up to you which path you take. If it was me, I'd probably set the AE 1 and 2 members to 1-4094 (or similar).
Good luck.